Methodology
I just ran across good, concise reviews of probability, Monte Carlo techniques, and especially statistical concepts (Estimators, maximum likelihood, Bayesian statistics, and more) at the the Particle Data Group. Hope you can find it useful. -Casey
Complex systems
Center for Models of Life: Great visualizations (Java applets) of "physics" models applied to communication and coevolution in biological systems. Maybe great research too.
Complexity Blog: By our very own Ken Zick and Aaron Bramson
Fun
An evolving artificial life screen saver.
Mirek Wojtowicz's personal site and source code:
http://psoup.math.wisc.edu/mcell/ : If there's an interest, I can dig up all the modeling from the GPS/NavStar corrections, Heliosphere/Interplanetary
Media aka weather, and Magnetosphere processing? It's really a question of application: the closer to actual physical and empirical systems the better,
because we've never really modeled our social or charitable projects. But for what it's worth, we do have actual data.
Alexander Crawford
Duke Philosophy of Biology Readings